Fail to install H5Z-ZFP in both my local computer and remote cluster

[lzhimin]

I use the spack to install H5Z-ZFP and both complain the following problem

==> Error: ProcessError: Command exited with status 2: 'make' '-j16' 'PREFIX=/home/sci/zhimin/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/h5z-zfp-1.0.1-7rl4zzh2isrkdlcwynkyz7bolpkqj73h' 'CC=/home/sci/zhimin/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/openmpi-4.1.5-js4vse4qmp7nmvtye7lkcuxfx73wm6ah/bin/mpicc' 'HDF5_HOME=/home/sci/zhimin/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/hdf5-1.14.1-2-x7ebmkcnokmiiewa72aqoct3onzkrdhm' 'ZFP_HOME=/home/sci/zhimin/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/zfp-1.0.0-boieacjuaukpfdtk23idw6pkzphtsfrc' 'FC=' 'all'

6 errors found in build log:

4 grep: /H5Zzfp_plugin.h: No such file or directory 5 cd src; make ZFP_HOME=/home/sci/zhimin/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/zfp-1.0.0-boieacjuaukpfdtk23idw6pkzphtsfrc PREFIX=/home/sci/zhimin/spack/opt/sp ack/linux-centos7-haswell/gcc-4.8.5/h5z-zfp-1.0.1-7rl4zzh2isrkdlcwynkyz7bolpkqj73h all 6 make[1]: Entering directory /tmp/zhimin/spack-stage/spack-stage-h5z-zfp-1.0.1-7rl4zzh2isrkdlcwynkyz7bolpkqj73h/spack-src/src' 7 /home/sci/zhimin/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/openmpi-4.1.5-js4vse4qmp7nmvtye7lkcuxfx73wm6ah/bin/mpicc -c H5Zzfp.c -o H5Zzfp_lib.o -DH5Z_ZFP_AS_LIB - fPIC -I. -I/home/sci/zhimin/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/zfp-1.0.0-boieacjuaukpfdtk23idw6pkzphtsfrc/include -I/home/sci/zhimin/spack/opt/spack/linux- centos7-haswell/gcc-4.8.5/hdf5-1.14.1-2-x7ebmkcnokmiiewa72aqoct3onzkrdhm 8 /home/sci/zhimin/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/openmpi-4.1.5-js4vse4qmp7nmvtye7lkcuxfx73wm6ah/bin/mpicc -c H5Zzfp_props.c -o H5Zzfp_props.o -fPIC -I. -I/home/sci/zhimin/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/zfp-1.0.0-boieacjuaukpfdtk23idw6pkzphtsfrc/include -I/home/sci/zhimin/spack/opt/spack/linux-centos7-h aswell/gcc-4.8.5/hdf5-1.14.1-2-x7ebmkcnokmiiewa72aqoct3onzkrdhm 9 /home/sci/zhimin/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/openmpi-4.1.5-js4vse4qmp7nmvtye7lkcuxfx73wm6ah/bin/mpicc -c H5Zzfp.c -o H5Zzfp_plugin.o -fPIC -I. -I/ho me/sci/zhimin/spack/opt/spack/linux-centos7-haswell/gcc-4.8.5/zfp-1.0.0-boieacjuaukpfdtk23idw6pkzphtsfrc/include -I/home/sci/zhimin/spack/opt/spack/linux-centos7-haswel l/gcc-4.8.5/hdf5-1.14.1-2-x7ebmkcnokmiiewa72aqoct3onzkrdhm 10 H5Zzfp.c:42:23: fatal error: bitstream.h: No such file or directory 11 #include "bitstream.h" 12 ^ 13 H5Zzfp.c:42:23: fatal error: bitstream.h: No such file or directory 14 #include "bitstream.h" 15 ^ 16 compilation terminated. 17 compilation terminated. 18 ar cr libh5zzfp.a H5Zzfp_props.o 19 make[1]: *** [H5Zzfp_lib.o] Error 1 20 make[1]: *** Waiting for unfinished jobs.... 21 make[1]: *** [H5Zzfp_plugin.o] Error 1 22 make[1]: Leaving directory/tmp/zhimin/spack-stage/spack-stage-h5z-zfp-1.0.1-7rl4zzh2isrkdlcwynkyz7bolpkqj73h/spack-src/src' 23 make: *** [all] Error 2

See build log for details: /tmp/zhimin/spack-stage/spack-stage-h5z-zfp-1.0.1-7rl4zzh2isrkdlcwynkyz7bolpkqj73h/spack-build-out.txt

[brtnfld]

I'm not sure. Maybe file an issue with spack and see what they say?

[lindstro]

@lzhimin This error has me concerned: H5Zzfp.c:42:23: fatal error: bitstream.h: No such file or directory 11 #include "bitstream.h". zfp 1.0.0 relocated this header, and it seems that you're using an older version of H5Z-ZFP (1.0.1, presumably) that (I believe) is incompatible with zfp 1.0.0. Can you try using the develop version of H5Z-ZFP with Spack? Someone really ought to update the H5Z-ZFP Spack package to support H5Z-ZFP 1.1.0.

[markcmiller86]

I agree with @lindstro H5Z-ZFP-1.01 is not the correct version to use with ZFP-1.0.0.

You should be using H5Z-ZFP-1.1.0.

You can affect this by adding necessary version constratins to your spack build command.

The spack recipe for H5Z-ZFP probably needs to be updated.

[lzhimin]

Thanks @lindstro @markcmiller86 spack install h5z-zfp@develop will address the problem.