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LPDI-EPFL / masif

MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
Apache License 2.0
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Patch extraction #2

Closed LivC193 closed 4 years ago

LivC193 commented 4 years ago

Sorry to bother you, I don't really understand how you divide the mesh surface into patches.

Do you start at one random vertex in the mesh, perform geodesic distance calculation for a given radius, select new vertex that is yet to be parsed in previous calculations or just compute patches for each vertex in the mesh? Input for neural network consists a matrix of size: number of patches x features considered (5)

I cannot find the code lines that explain this patch division.

Best, Liv

FreyrS commented 4 years ago

Hi Liv The patches are computed for every vertex in the mesh. They are extracted during the precomputation under source/matlab_libs/coords_mds.m. Let us know if you have any further questions!