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LPDI-EPFL / masif

MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
Apache License 2.0
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second_stage_alignment_nn.py error #8

Closed AthenACHY closed 4 years ago

AthenACHY commented 4 years ago

Hi there, I am trying to see if I can train the ppi-search model and use it for new predictions. However, when I was following the instruction and run ./second_stage_masif.sh 100 there is en error message from python 3.

File "/masif/source//masif_ppi_search/second_stage_alignment_nn.py", line 114, in read_point_cloud( NameError: name 'read_point_cloud' is not defined

Would you mind letting me know how to fix it? Also, would you mind kindly describing how to prepare my own data ( I have some docking models from Rosetta) as I would like to use them for the ppi_search. Thanks.

pablogainza commented 4 years ago

Hi ! Sorry for the late response. I tried to reproduce the error but I'm not getting it. Did you run this from the /masif/comparison/masif_ppi_search directory?

Did you do a git pull afterwards?

AthenACHY commented 4 years ago

Hey there, I think it runs fine now after I updated my version with git pull 2 weeks ago. Thanks