search

LPDI-EPFL / masif_seed

Masif seed paper repository
Apache License 2.0
129 stars 31 forks source link

can not run masif_seed_pdl1.ipynb #10

Open nongbaoting opened 1 year ago

nongbaoting commented 1 year ago

when run the refinement steps,

with open(os.path.join(refined_dir, 'input.list'), 'w') as f:
    f.write('\n'.join([target + ' ' + m for m in matches]))

got error

NameError                                 Traceback (most recent call last)
Cell In[14], line 2
      1 with open(os.path.join(refined_dir, 'input.list'), 'w') as f:
----> 2     f.write('\n'.join([target + ' ' + m for m in matches]))

Cell In[14], line 2, in <listcomp>(.0)
      1 with open(os.path.join(refined_dir, 'input.list'), 'w') as f:
----> 2     f.write('\n'.join([target + ' ' + m for m in matches]))

NameError: name 'target' is not defined
xiaolinpan commented 1 year ago

Hi, the tutorial is not clear. For the first step in the pdl1 Jupyter notebook (Collect MaSIF matches and scores), do you know how to get the data for the 5jds_A? Thank you for your help! @nongbaoting

TobiasPol commented 1 year ago

Im having the same error at the moment. Is there any update on this?

ugeshe commented 1 month ago

Hi, the tutorial is not clear. For the first step in the pdl1 Jupyter notebook (Collect MaSIF matches and scores), do you know how to get the data for the 5jds_A? Thank you for your help! @nongbaoting

I am also experiencing the same issues.