Even though the documentation states that the models and read_model_map files should be gzipped (models.gtf.gz and read_model_map.tsv.gz, see https://lrgasp.github.io/lrgasp-submissions/docs/submission.html), lrgasp-validate-entry looks for non-gzipped versions of those files in the entry directory, and raises an error if the files are gzipped:
diekhans
commented
3 years ago
Even though the documentation states that the models and read_model_map files should be gzipped (
models.gtf.gzandread_model_map.tsv.gz, see https://lrgasp.github.io/lrgasp-submissions/docs/submission.html),lrgasp-validate-entrylooks for non-gzipped versions of those files in the entry directory, and raises an error if the files are gzipped:$ lrgasp-validate-entry iso_detect_ref_crg_CapTrap_PacBioUnzipping the files solves the problem.