Closed andrewprzh closed 2 years ago
this is fixed in 1.8.0 release
Andrey Prjibelski @.***> writes:
Dear Mark,
a small problem regarding R2C2 submission for challenge 2: as indicated here, column names in expression.tsv should be comma-separated: https://lrgasp.github.io/lrgasp-submissions/docs/faq.html
But when comma separated libraries are provided in
libraries
section in experiment.json, the validation reportscaused by: experiment field 'libraries' is not valid, value is 'ENCFF379KHH,ENCFF694JLN' caused by: not a valid symbolic identifier 'ENCFF379KHH,ENCFF694JLN'
When libraries are listed one by one in experiment.json, validation fails with:
caused by: matrix column 'ENCFF379KHH,ENCFF694JLN' is not listed in experiment_md.libraries for 'H1_mix_r2c2_ont'
Thanks a lot! Andrey
I've checked the version before reporting the issue and it was 1.8. However, it looks like we had some mix-up between locally install 1.8 and system-wide one, for some reason pip only installs 1.7 if not directly specified. Sorry for reporting this!
Dear Mark,
a small problem regarding R2C2 submission for challenge 2: as indicated here, column names in expression.tsv should be comma-separated: https://lrgasp.github.io/lrgasp-submissions/docs/faq.html
But when comma separated libraries are provided in
libraries
section in experiment.json, the validation reportsWhen libraries are listed one by one in experiment.json, validation fails with:
caused by: matrix column 'ENCFF379KHH,ENCFF694JLN' is not listed in experiment_md.libraries for 'H1_mix_r2c2_ont'
Thanks a lot! Andrey