elisachisari
commented
2 years ago I tried to run this new version for the Y1 yaml example and I ran into issues towards the end. I copy the log.
Pipeline ran okay. Applying additional prior sigma = 0.2 to params--omega_c This will be assumed to be centered at the parameter center regardless of what the ini file says The limits of the parameter will also not be respected.
Applying additional prior sigma = 0.8 to params--w0 This will be assumed to be centered at the parameter center regardless of what the ini file says The limits of the parameter will also not be respected.
Applying additional prior sigma = 2.0 to params--wa This will be assumed to be centered at the parameter center regardless of what the ini file says The limits of the parameter will also not be respected.
Applying additional prior sigma = 0.3 to params--h This will be assumed to be centered at the parameter center regardless of what the ini file says The limits of the parameter will also not be respected.
Applying additional prior sigma = 0.14 to params--sigma8 This will be assumed to be centered at the parameter center regardless of what the ini file says The limits of the parameter will also not be respected.
Applying additional prior sigma = 0.08 to params--n_s This will be assumed to be centered at the parameter center regardless of what the ini file says The limits of the parameter will also not be respected.
Applying additional prior sigma = 3.9 to params--a0 This will be assumed to be centered at the parameter center regardless of what the ini file says The limits of the parameter will also not be respected.
Applying additional prior sigma = 0.5 to params--bias_lens0 This will be assumed to be centered at the parameter center regardless of what the ini file says The limits of the parameter will also not be respected.
Applying additional prior sigma = 0.5 to params--bias_lens1 This will be assumed to be centered at the parameter center regardless of what the ini file says The limits of the parameter will also not be respected.
Applying additional prior sigma = 0.5 to params--bias_lens2 This will be assumed to be centered at the parameter center regardless of what the ini file says The limits of the parameter will also not be respected.
Applying additional prior sigma = 0.5 to params--bias_lens3 This will be assumed to be centered at the parameter center regardless of what the ini file says The limits of the parameter will also not be respected.
Applying additional prior sigma = 0.5 to params--bias_lens4 This will be assumed to be centered at the parameter center regardless of what the ini file says The limits of the parameter will also not be respected.
Postprocessing...
Generated covariance matrix was not positive definite - beware! /Users/chisa002/Documents/lsst_augur/augur/augur/postprocess.py:151: RuntimeWarning: invalid value encountered in sqrt
heights = 2 np.sqrt(0.5 (C[0, 0] + C[1, 1] - D))
/Users/chisa002/Documents/lsst_augur/augur/augur/postprocess.py:161: RuntimeWarning: invalid value encountered in sqrt
sig0 = np.sqrt(C[0, 0])
Traceback (most recent call last):
File "/Users/chisa002/opt/anaconda3/envs/forecasting/bin/augur", line 7, in
fjaviersanchez
This PR tries to address #16, implementing our own derivatives of the loglikelihood to get the Fisher matrix. It is still work in progress.