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LTLA / batchelor

Clone of the Bioconductor repository for the batchelor package.
https://bioconductor.org/packages/devel/bioc/html/batchelor.html
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Using MNN corrected data for diffusion map generation #25

Open shokohirosue opened 3 years ago

shokohirosue commented 3 years ago

Hi Aaron,

Do you think it is appropriate to use MNN corrected data for diffusion map formation too?

Thank you for your help.

LTLA commented 3 years ago

Sounds perfectly reasonable to me.

shokohirosue commented 3 years ago

Thank you! Do you have any recommendations? Tools I have tried so far seem to use normalised count or count data matrix.