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LTLA / scRNAseq

Clone of the Bioconductor repository for the scRNAseq package.
http://bioconductor.org/packages/devel/data/experiment/html/scRNAseq.html
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Unable to access package functions properly #52

Closed gnvalbuena closed 6 months ago

gnvalbuena commented 6 months ago

Hi,

I've just installed the scRNAseq package as per instructions on bioconductor, and I seem to be getting namespace issues I don't entirely understand the cause of.

I've got scRNAseq_2.16.0 installed and loaded on R version 4.3.2, but when I try to run the following:

library(scRNAseq)
searchDatasets("brain")[,c("name", "title")]

I get the error message Error in searchDatasets("brain") : could not find function "searchDatasets"

And when I try

library(scRNAseq)
all.ds <- scRNAseq::surveyDatasets()

I get the error message Error: 'surveyDatasets' is not an exported object from 'namespace:scRNAseq'.

How do I resolve this given that these functions are pretty much fundamental to getting the package working?

Thanks!

Best, Gabriel

LTLA commented 6 months ago

I assume you're looking at the latest instructions on the landing page, which correspond to version 2.18.0 of the package. The older versions don't have surveyDatasets and friends, just scRNAseq::listDatasets().