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LTLA / scRNAseq

Clone of the Bioconductor repository for the scRNAseq package.
http://bioconductor.org/packages/devel/data/experiment/html/scRNAseq.html
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ZilionisLungData "ND" cell type #54

Open chklee30 opened 5 months ago

chklee30 commented 5 months ago

Hello,

The data fetched using the ZilionisLungData() function includes cells with the label "ND" as one of the "major cell types". Does anyone know what this means?

LTLA commented 5 months ago

I have no idea, I'm afraid. AFAICT this was not added by me (see here) so I can only assume this is author-provided. Perhaps they could shed some light on it; I'm happy to add something to the dataset's description to help future users.

DarioS commented 3 months ago

ND is present in the source Gene Expression Omnibus file. Corresponding author Allon Klein explains by e-mail:

Not Defined. We decided not to label some states, such as transitional states.