LTLA / scuttle

Clone of the Bioconductor repository for the scuttle package.
https://bioconductor.org/packages/devel/bioc/html/scuttle.html
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Error in evaluating the argument 'x' in selecting a method for function 'colnames': subscript out of bounds #26

Open RunyuXia opened 8 months ago

RunyuXia commented 8 months ago

sce.sum <- aggregateAcrossCells(top,

Hi! I'm trying to run aggregateAcrossCells but keep getting the above error. My colnames is the cell barcode and SampleID column in my colData specifies which sample each cell comes from. I have checked that colnames and SampleID have the same length. I want to aggregate the cells based on the sample.

Thank you for your help!

LTLA commented 7 months ago

Can you provide a minimum reproducible example with the most recent release version of scuttle (1.12.0) , e.g., based on the example in ?aggregateAcrossCells?