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LTS5 / cmp_nipype

This repository is meant to host a beta version for the future release of the ConnectomeMapper.
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A lots of problems installing... #28

Closed MarcRamos closed 8 years ago

MarcRamos commented 10 years ago

Yesterday I got some errors concerning files that cmp doesn't find even they are there. I tried re-installing the latest version but now I have the following error: fsl.Orient AttributeError: 'module' object has no attribute 'Orient' Interface SwapAndReorient failed to run. I remember having that error before. It's weird because everything was fine yesterday but in the afternoon started to fail. I am trying to process DTI with custom parcellation. Best, Marc

MarcRamos commented 10 years ago

Like this error all the time: File "/usr/lib/pymodules/python2.7/nipype/pipeline/engine.py", line 1494, in _run_interface old_cwd = os.getcwd() OSError: [Errno 2] No such file or directory Can it be something of the $PATH?

MarcRamos commented 10 years ago

The first time I click Check input data there is the error of 'Orient' module The second time I click there File "/usr/lib/pymodules/python2.7/nipype/pipeline/engine.py", line 1494, in _run_interface old_cwd = os.getcwd() The third time I click there File "/usr/lib/pymodules/python2.7/nipype/pipeline/utils.py", line 89, in modify_paths basedir = os.getcwd()

MarcRamos commented 10 years ago

I haven't got nipype correctly installed, sorry guys!