LUMC pytest-workflow issues

LUMC / pytest-workflow

Configure workflow/pipeline tests using yaml files.

https://pytest-workflow.readthedocs.io/en/stable/

GNU Affero General Public License v3.0

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issues

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feature request: Add something like --exclude-tag in addition to --tag

#202 stianlagstad opened 2 days ago
2
feature request: Report command runtime

#201 stianlagstad opened 3 days ago
1
Respect pytest `-s` flag, streaming stdout/stderr as the test runs

#200 jchorl opened 1 month ago
1
Stream output as test runs

#199 jchorl opened 1 month ago
4
pytest-workflow crashes if it finds an empty yml file

#198 Redmar-van-den-Berg opened 2 months ago
0
Fix unbound local variable error

#197 jdidion closed 3 months ago
1
Feature request - making custom tests interoperable with `@pytest.mark.parametrize`

#196 theJasonFan opened 4 months ago
2
Feature request: Only run assertions (--skip-command?)

#195 stianlagstad closed 4 months ago
2
add metadata field for custom tests

#194 sstrong99 opened 5 months ago
12
Add a pytest-workflow generate command line function

#193 rhpvorderman opened 5 months ago
3
Release 2.1.0

#192 rhpvorderman closed 5 months ago
0
Release 2.1.0

#191 rhpvorderman closed 5 months ago
0
Add 3.12 python support, drop 3.7 support

#190 rhpvorderman closed 6 months ago
0
Make pytest_collect_file() compatible with pytest 8.1+

#189 JAlvarezJarreta closed 6 months ago
5
Feature request: Allow wildcard in path

#188 stianlagstad closed 9 months ago
3
how to customize steps before each workflow test

#187 anoronh4 opened 11 months ago
11
is it possible to run pytest and only run non-pytest-workflow tests

#186 sstrong99 closed 11 months ago
3
option to disable copying of project directory

#185 ahvigil closed 10 months ago
1
Add hook for custom tests in test yaml

#184 sstrong99 opened 1 year ago
5
example implementation for fail_if_unknown

#183 sstrong99 closed 1 year ago
1
feature request: fail if any unknown files exist

#182 sstrong99 opened 1 year ago
9
collected items

#181 lihaicheng7003 closed 9 months ago
2
allow wildcard matching for file paths

#180 sstrong99 closed 1 year ago
2
Feature request: Add something like `must_match_file` in addition to `md5sum`

#179 stianlagstad opened 1 year ago
3
Use xopen throughout the code

#178 rhpvorderman opened 1 year ago
0
Add extract_md5sum check

#177 wholtz closed 1 year ago
3
Optionally Re-run the tests but not the workflow to help develop tests

#176 yfarjoun opened 1 year ago
5
add file diffing

#175 ahvigil closed 1 year ago
6
Rerun last failed workflows in same tmp directory?

#174 glormph opened 1 year ago
6
bioconda package is outdated

#173 stevekm closed 1 year ago
2
Document test discovery naming conventions

#172 wholtz closed 1 year ago
2
Release 2.0.1

#171 rhpvorderman closed 1 year ago
0
Release 2.0.1

#170 rhpvorderman closed 1 year ago
0
Functional tests for nextflow

#169 rhpvorderman closed 1 year ago
0
Fix crash when stderr bytes is not properly not aligned with the encoding

#168 rhpvorderman closed 1 year ago
0
In rare cases, pytest-workflow crashes on log files with special characters

#167 Redmar-van-den-Berg closed 1 year ago
2
Release 2.0.0

#166 rhpvorderman closed 1 year ago
0
Release 2.0.0

#165 rhpvorderman closed 1 year ago
0
Fix symlinks to directories fail when copying with --git-aware flag.

#164 rhpvorderman closed 1 year ago
0
Add an encoding key to the YAML. Only open and read files once at maximum.

#163 rhpvorderman closed 1 year ago
0
Collecting tests fails due to git submodules and symlinks

#162 wholtz closed 1 year ago
3
File encodings can not be defined when opening files for content tests

#161 fabianegli closed 1 year ago
5
Files are read twice even if no patterns are given

#160 fabianegli closed 1 year ago
2
How to run pytest-workflow from Python?

#159 stevekm opened 1 year ago
4
Workflow testing at scale using SLURM

#158 wholtz closed 1 year ago
3
Drop python 3.6 support

#157 rhpvorderman closed 1 year ago
0
docs: pytest flags -k and -m are not supported

#156 wholtz closed 1 year ago
1
Selecting a subset of tests to run

#155 wholtz closed 1 year ago
4
Skipping when exit code has failed for workflow custom tests.

#154 rhpvorderman opened 1 year ago
1
Exitcode skips

#153 lucasvanb closed 1 year ago
1