py integral display matches sid3

LabNeuroCogDevel / MRSIcoord.py

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py integral display matches sid3 #3

Open WillForan opened 4 years ago

WillForan commented 4 years ago

check matrix orientation and integral calc

WillForan commented 1 year ago

doesn't look promising. looks like LR flip and maybe need to try integtype==3 from sid3_MRRC/IntegrateSI.m

sum = sum + sqrt((SI(a,sipos).*SI(a,sipos))+(SI(a+sipts,sipos).*SI(a+sipts,sipos)));

bone=plt.get_cmap("bone").copy(); bone.set_bad(color="black")
plt.imshow( np.ma.masked_where(abs(intgrl) < 1, adjust(intgrl,0,100,5)), cmap=bone,vmax=30 )

/Volumes/Hera/Projects/7TBrainMech/scripts/mri/MRSI_roi
autosid3 11868_20211025

WillForan commented 1 year ago

confirm matlab gui using type == 3

>> eh = findobj(gcf,'Tag','IntegrateType');
>> eh.Value

ans =

     3