LabTranslationalArchitectomics / riboWaltz

optimization of ribosome P-site positioning in ribosome profiling data
MIT License
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ribowaltz for R version 4.1.2 #60

Closed dksenthil closed 2 years ago

dksenthil commented 2 years ago

getting this error.


> BiocManager::install("riboWaltz",force = T)
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details

replacement repositories:
    CRAN: https://cran.rstudio.com/

Bioconductor version 3.14 (BiocManager 1.30.18), R 4.1.2 (2021-11-01)
Installing package(s) 'riboWaltz'
Warning message:
package ‘riboWaltz’ is not available for Bioconductor version '3.14'

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages 
fabiolauria commented 2 years ago

Hi, it is clear riboWaltz is here treated as a Bioconductor package, which is not. Where did you find BiocManager::install("riboWaltz",force = T) reported as the proper command for getting riboWaltz installed? It is true that BiocManager::install should handle Github packages as well, but clearly this is not the right syntax. You better stick with the lines reported at the installation section of the readMe. Have you already tried that way? If so and you didn't manage to get riboWaltz installed, you R version is maybe too recent for it.

Either ways, please keep me updated.

Best Fabio

dksenthil commented 2 years ago

Thanks. Solved.