The demux module currently has an option for outputting sample specific fastqs (-q [ --fastq_output ] arg).
I would like to add a new option that will create a single output fastq file containing all of the reads that have not been mapped to a sample/peptide (i.e., all of those that would not be included in any of the files created by the -q option).
The demux module currently has an option for outputting sample specific fastqs (-q [ --fastq_output ] arg).
I would like to add a new option that will create a single output fastq file containing all of the reads that have not been mapped to a sample/peptide (i.e., all of those that would not be included in any of the files created by the -q option).