Now using options and can use blast on nt

Lafond-LapalmeJ / MCSC_Decontamination

Scripts and documentations on the MCSC decontamination method

GNU General Public License v3.0

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Now using options and can use blast on nt #24

Closed duceppemo closed 1 year ago

duceppemo commented 7 years ago

Arguments are now passed through option flags. New flags were added. Now user must choose between "long" and "short assembly. Shot -> use diamond blast uniref90 long -> use megablast on nt