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Lan-lab / SIGNET

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NTF training terminated and only 4 output files generated #1

Closed ozlembahar closed 2 years ago

ozlembahar commented 2 years ago

Hi,

Thanks a lot for a very clear workflow. I am excited to apply this tool to my work however after binarization step I got warnings and errors and I guess ntf training step was terminated. It seems 4 out of 6 output files were generated. I could not figure out what was the reason and would appreciate any help or suggestion.

Please find the outputs and the warnings text file attached.

Best, bahar

gene_ntf.csv gene_tf.csv data_ntf_binary.txt data_tf_binary.txt warnings.txt

luoqh17 commented 2 years ago

Did you use OS X system to run this code? If so,this problem seems to be caused by threading corrupt between pytorch and the OS system you used. I am not sure how we can go about debugging this. Here, I found a similar problem link might help you. https://github.com/icaros-usc/pyribs/issues/175

luoqh17 commented 2 years ago

If you have no other problems, I will close this problem