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LangilleLab / microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
GNU General Public License v3.0
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plot_metagenome_contributions.R #12

Closed rajansuja closed 6 years ago

rajansuja commented 6 years ago

Is there a way to increase the number of colors while plotting the stacked graph with plot_metagenome_contributions.R? Because right now a set of 12 colors keeps getting repeated to cover all categories within a rank. Please let me know. thanks.

gavinmdouglas commented 6 years ago

Those 12 colours are the script’s default, which were chosen since they can be qualitatively distinguished easily. However, you can also use the default R colours with this flag: "—R_default_colours”, which will likely be harder to distinguish, but will use a different colour for each different category.

Best,

Gavin

On Aug 22, 2017, at 7:11 PM, rajansuja notifications@github.com wrote:

Is there a way to increase the number of colors while plotting the stacked graph with plot_metagenome_contributions.R? Because right now a set of 12 colors keeps getting repeated to cover all categories within a rank. Please let me know. thanks.

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