Added the ability to choose the abundance cutoff for remove_low_confidence_otus.py

LangilleLab / microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

GNU General Public License v3.0

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Added the ability to choose the abundance cutoff for remove_low_confidence_otus.py #28

Closed nearinj closed 5 years ago

nearinj commented 6 years ago

Added a simple argument that allows you to choose the abundance cutoff you would like to use. The default is still 0.1%.

gavinmdouglas commented 6 years ago

Did you mean to add test.biom?

nearinj commented 6 years ago

I did not i'll fix this now

gavinmdouglas commented 6 years ago

The % character in the help string causes an error. I think you should remove it and just state that the input value needs to be a percent and not a proportion.