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LangilleLab / microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
GNU General Public License v3.0
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Improving Faprotax returns #50

Closed GarthWatson closed 3 years ago

GarthWatson commented 4 years ago

In the report output I am getting less than 50% of my OTUs mapping to function. Is that what I am to accept of are there configuarble settings to improve that?

gavinmdouglas commented 4 years ago

Hi @GarthWatson,

I'm not sure whether that range is reasonable or not - I would recommend you touch base with the Faprotax author to ask about configuration.

Best,

Gavin

GarthWatson commented 4 years ago

Thanks for that. Had not thought of that myself!

From: Gavin Douglas notifications@github.com Sent: Thursday, 18 June 2020 11:20 PM To: LangilleLab/microbiome_helper microbiome_helper@noreply.github.com Cc: Watson, Garth (L&W, Albury) Garth.Watson@csiro.au; Mention mention@noreply.github.com Subject: Re: [LangilleLab/microbiome_helper] Improving Faprotax returns (#50)

Hi @GarthWatsonhttps://github.com/GarthWatson,

I'm not sure whether that range is reasonable or not - I would recommend you touch base with the Faprotax author to ask about configuration.

Best,

Gavin

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