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LangilleLab / microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
GNU General Public License v3.0
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a issue about the concat_paired_end.pl #62

Open zhangyongyongsyau opened 9 months ago

zhangyongyongsyau commented 9 months ago

Hi, I use the concat_paired_end.pl to combine my forward and reverse files (each 16 G), the forward and reverse files were trimed using the kneaddata. However, the concatenated file only have a size of 4M.

can you please help?

Thank you for your attention!

amcomeau commented 9 months ago

Could you give us a bit more info? What was the exact command run? You are sure something didn't go wrong (potentially) during kneaddata and your new input files are only ~2 Mb each which would combine to ~4 Mb?

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Hi, I use the concat_paired_end.pl to combine my forward and reverse files (each 16 G), the forward and reverse files were trimed using the kneaddata. However, the concatenated file only have a size of 4M.

can you please help?

Thank you for your attention!

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