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LangilleLab / microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
GNU General Public License v3.0
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Can I do denovo chimeric detection with MBH #8

Closed caijian89 closed 7 years ago

caijian89 commented 7 years ago

Hello！ I am a fresh man with the bioinformatic analysis of microbial community. You MBH is really awesome and helpful.
I have a question with the chimer filter process as following: Can I do a denovo chimeric detection with your pipeline, and how to do it within your Vitural system.

gavinmdouglas commented 7 years ago

Hey there,

We don’t have a script to run de novo chimera checking, but I’ve added some example commands to our wiki site: https://github.com/mlangill/microbiome_helper/wiki/Remove-chimeric-reads#de-novo-chimera-checking https://github.com/mlangill/microbiome_helper/wiki/Remove-chimeric-reads#de-novo-chimera-checking

Let me know if you have any questions.

Cheers,

Gavin

On Jun 21, 2017, at 11:41 AM, caijian89 notifications@github.com wrote:

Hello！ I am a fresh man with the bioinformatic analysis of microbial community. You MBH is really awesome and helpful. I have a question with the chimer filter process as following: Can I do a denovo chimeric detection with your pipeline, and how to do it within your Vitural system.

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caijian89 commented 7 years ago

Hi Gavin！ Great thanks for your helpful reply. ^_^

Jian