Error running fetch_haplotype

Hello,

I'm receiving the below error when running fetch_haptope:

fetch_haplotype -b AllBDRTargeted.sorted.bam -t AllBDRTargeted2Transcriptome.sorted.bam -s snps.tsv

2024-09-05 14:17:18 INFO:       Welcome to fetch_haplotype !
2024-09-05 14:17:18 INFO:       Author: Dafni Glinos (dglinos@nygenome.org)
2024-09-05 14:17:18 INFO:       Reading transcripts from AllBDRTargeted2Transcriptome.sorted.bam
2024-09-05 14:17:18 INFO:       getting qnames
Traceback (most recent call last):
  File "/lustre/home/sl693/.conda/envs/nanopore/bin/fetch_haplotype", line 33, in <module>
    sys.exit(load_entry_point('LORALS==0.0.0', 'console_scripts', 'fetch_haplotype')())
  File "/lustre/home/sl693/.conda/envs/nanopore/lib/python3.6/site-packages/LORALS-0.0.0-py3.6.egg/lorals/scripts.py", line 764, in fetch_haplotype
  File "/lustre/home/sl693/.conda/envs/nanopore/lib/python3.6/site-packages/LORALS-0.0.0-py3.6.egg/lorals/asts.py", line 297, in qnames

cat snps.tsv
#chrom  #position       #reference      #alternate
chr18   76979023        T       C

Any help on this would be great. Thank you!

LappalainenLab / lorals

Error running fetch_haplotype #13