The main patch is to add a pattern to the file search in script "3b_collate_phasing_stats.R" (line 17) so that it doesn't just assume all files in the directory are stats files (possible if the user specified a specific directory for the phasing stats rather than a default empty directory).
The other changes are to the 2a 2b 3a 3b scripts to clean up the code a bit for readability and slight syntax changes (these are minor and shouldn't affect the functions).
The main patch is to add a pattern to the file search in script "3b_collate_phasing_stats.R" (line 17) so that it doesn't just assume all files in the directory are stats files (possible if the user specified a specific directory for the phasing stats rather than a default empty directory).
The other changes are to the 2a 2b 3a 3b scripts to clean up the code a bit for readability and slight syntax changes (these are minor and shouldn't affect the functions).