LarsNauheimer / HybPhaser

Workflow to detect and phase hybrids in target capture data
GNU General Public License v3.0
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Add missing variable to step 4 #14

Open bmichanderson opened 1 year ago

bmichanderson commented 1 year ago

This is a small patch to define the variable notphased2remove in the case when the user has specified "no" in the config.txt file (lines 89, 90). The current script will fail otherwise, as the variable is only defined if the user has specified something other than "no". I've also made minor changes to the code to clean it up a bit, hopefully without changing the functionality of the script.