Consensus sequence files all empty

LarsNauheimer / HybPhaser

Workflow to detect and phase hybrids in target capture data

GNU General Public License v3.0

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Consensus sequence files all empty #18

Closed bfauskee closed 1 year ago

bfauskee commented 1 year ago

Trying to run the first script: bash 1_generate_consensus_sequences.sh -n namelist.txt -p hybpiper_output/ -o ./hybphaser -t 8 and all the consensus sequence files are empty. Seems like the script is finding my reads and contigs and generating BAMS and VCFs.

erika-r-moore commented 1 year ago

I am having the same issue. Is there a solution to resolve this?