In the case that the user specifies a file of paralogs to be removed from every sample, the script will hit an error when checking the value of "threshold_value" (line 251), since it has not been defined.
I have added a meaningless value for "threshold_value" at the point where the script checks whether a file has been specified for the paralog removal steps.
LarsNauheimer
commented
1 year ago
In the case that the user specifies a file of paralogs to be removed from every sample, the script will hit an error when checking the value of "threshold_value" (line 251), since it has not been defined. I have added a meaningless value for "threshold_value" at the point where the script checks whether a file has been specified for the paralog removal steps.