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LarsNauheimer / HybPhaser

Workflow to detect and phase hybrids in target capture data
GNU General Public License v3.0
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added definitions for variables expected in environment #8

Closed bmichanderson closed 1 year ago

bmichanderson commented 1 year ago

I have added definitions for variables expected to be in the R environment so that this script can be run independently of the previous script. I assume the variables "failed_loci" and "failed_samples" are calculated correctly here, but I am using the cleaned SNPs table rather than the raw one as in the previous script. I hope that is OK.

This addresses issue #6

LarsNauheimer commented 1 year ago

That should be fine. I still have to try it out to be sure.