Hello,
Thank you for making and maintaining this tool.
I'm trying to figure out the best folding for a sequence of unknown length, so I'm trying all reasonable sequence lengths 2-100 nt
the issue is that for certain lengths, seqfold is unable to find more than a single paired base, even though there are plenty of hairpins in the sequence.
in the attached image, each line is the dotbrackt view of one seqfold run, each with +1nt of the same sequence
do you know what this software behaviour could be caused by?
Hello, Thank you for making and maintaining this tool. I'm trying to figure out the best folding for a sequence of unknown length, so I'm trying all reasonable sequence lengths 2-100 nt the issue is that for certain lengths, seqfold is unable to find more than a single paired base, even though there are plenty of hairpins in the sequence. in the attached image, each line is the dotbrackt view of one seqfold run, each with +1nt of the same sequence
do you know what this software behaviour could be caused by?
Best
Tue