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LauraMCE / lncRNA_BC

It is a repository that contains information about my master's project. The main topic is lincRNA as biomarkers in breast cancer. The main objective is to identificate lincRNA biomarkers by transcriptome analysis
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Evaluation 30 October #16

Closed camillethuyentruong closed 4 years ago

camillethuyentruong commented 4 years ago

Hi Laura,

I had a look at your repo and README file. In general it is good and well-structured, well done! Below are some suggestions for improvement:

General README

Exome project The README file of the Exome project needs to be completed, explaining briefly the goals of the projects and describing the data, scripts and code for meta that are (or will be) included.

Transcriptome project:

LauraMCE commented 4 years ago

Hi Laura,

I had a look at your repo and README file. In general it is good and well-structured, well done! Below are some suggestions for improvement:

General README

  • I suggest you include the information from Repo_analysis.md as an introduction for your project in the general README (or at least a link to Repo_analysis.md in the general README)
  • Please describe shortly what are the files included in the STB folder, with links to your presentations

Exome project The README file of the Exome project needs to be completed, explaining briefly the goals of the projects and describing the data, scripts and code for meta that are (or will be) included.

Transcriptome project:

  • Please explain the code for the meta data in the README file
  • The scripts Choc_GSEA and Choc_Volcano_plot are not described in the README file
  • The folder for "results" is missing in data. I suggest you make a separate folder inside the Transcriptome directory for results and graphics

Thank you so much! I will work in the observations.

LauraMCE commented 4 years ago

Hi Laura,

I had a look at your repo and README file. In general it is good and well-structured, well done! Below are some suggestions for improvement:

General README

  • I suggest you include the information from Repo_analysis.md as an introduction for your project in the general README (or at least a link to Repo_analysis.md in the general README)
  • Please describe shortly what are the files included in the STB folder, with links to your presentations

Exome project The README file of the Exome project needs to be completed, explaining briefly the goals of the projects and describing the data, scripts and code for meta that are (or will be) included.

Transcriptome project:

  • Please explain the code for the meta data in the README file
  • The scripts Choc_GSEA and Choc_Volcano_plot are not described in the README file
  • The folder for "results" is missing in data. I suggest you make a separate folder inside the Transcriptome directory for results and graphics

Hi! This observation is covered:

  • I suggest you include the information from Repo_analysis.md as an introduction for your project in the general README (or at least a link to Repo_analysis.md in the general README)
LauraMCE commented 4 years ago
  • Please describe shortly what are the files included in the STB folder, with links to your presentations

Done!

LauraMCE commented 4 years ago
  • The folder for "results" is missing in data. I suggest you make a separate folder inside the Transcriptome directory for results and graphics

Done!

LauraMCE commented 4 years ago
  • The scripts Choc_GSEA and Choc_Volcano_plot are not described in the README file

Done

LauraMCE commented 4 years ago
  • Please explain the code for the meta data in the README file

Done

LauraMCE commented 4 years ago

Exome project The README file of the Exome project needs to be completed, explaining briefly the goals of the projects and describing the data, scripts and code for meta that are (or will be) included.

Done