Closed reberya closed 1 year ago
Hello reverya, What version of the package are you using? This was corrected roughly when biomaRt's terminology changed and neither the source package in this repository nor the version available via Bioconductor use "Entrezgene".
If the error persists after updating the package, please post a snippet of the code you used and the error message returned.
Cheers.
Hello,
The preProcessInputData needs to be updated with its use of ensembl's biomart. Some of the terms have changed. The example I ran into was that "Entrezgene" is now entrezgene_id. When running the preProcessInput function returns an error that it cannot get the attribute from biomaRt and asks user to find proper attribute using listAttributes().