search

LauraPS1 / TFEA.ChIP_downloads

TFEA.ChIP is an R package in developement. Its purpose is to analyze transcription factor enrichment in a set of differentially expressed genes.
5 stars 1 forks source link

NA after Select_genes #5

Closed GildasLepennetier closed 3 years ago

GildasLepennetier commented 3 years ago

I have some NA returned from the function TFEA.ChIP::Select_genes()

I ignore them using the following:

Genes.Upreg <- na.omit(TFEA.ChIP::Select_genes( InputData, min_LFC=1 ))

Since NA are quite dangerous in R when selecting data, I suspect it would be great to automatically ignore them in this function. return( na.omit( geneSelection ) )

I may also be doing something wrong to have NA (?) but I do have them in my column of padj values.

EDIT: closed and moved issue to https://github.com/LauraPS1/TFEA.ChIP