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Lee-CBG / ATM-TCR

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Unclear CLI argument: `--indepfile` #19

Open kamurani opened 3 months ago

kamurani commented 3 months ago

In the example command given, the required argument --indepfile is provided.

However, it is not clear how this should be used as separate to --infile when using a pre-trained model for creating predictions on an input file.

Clearer documentation would help clarify this. 

python main.py --infile data/combined_dataset.csv --indepfile data/covid19_data.txt --model_name my_custom_model_name --mode test
RivkaBouhnik commented 1 week ago

In the example command given, the required argument --indepfile is provided.

However, it is not clear how this should be used as separate to --infile when using a pre-trained model for creating predictions on an input file.

Clearer documentation would help clarify this.

python main.py --infile data/combined_dataset.csv --indepfile data/covid19_data.txt --model_name my_custom_model_name --mode test

Did you finally figure it out?