This repository contains a reciprocal BLAST program for filtering down BLAST results to best bidirectional hits. It also contains a toolkit for finding and visualizing BLAST hits for gene clusters within multiple bacterial genomes.
@LeeBergstrand This is my proposed way to streamline and reorganize the repo. Major changes:
All scripts are now in the scripts folder and begin with BackBLAST_ for clarity once installed. Graph.py is in the utils folder.
BackBLAST.py is now in the scripts folder and is called BackBLAST_core.py. BackBLAST.sh is now BackBLAST.
ExampleData is now testing. Only the new test data has been kept.
Modules have been removed.
Several unused scripts have been removed.
What are your thoughts? I've done this on the file level only so far -- the code itself has not yet been modified to reflect the file name changes. Once we've settled on a good way to redo the repo, I'll continue working on this branch to modify the code itself. In other words, don't merge this branch yet -- I'd just like some initial feedback. Thanks.
(One key question is whether you want to keep some of the unused scripts I removed by moving them over to a new repo.)
@LeeBergstrand This is my proposed way to streamline and reorganize the repo. Major changes:
scriptsfolder and begin withBackBLAST_for clarity once installed.Graph.pyis in theutilsfolder.BackBLAST.pyis now in the scripts folder and is calledBackBLAST_core.py.BackBLAST.shis nowBackBLAST.ExampleDatais nowtesting. Only the new test data has been kept.What are your thoughts? I've done this on the file level only so far -- the code itself has not yet been modified to reflect the file name changes. Once we've settled on a good way to redo the repo, I'll continue working on this branch to modify the code itself. In other words, don't merge this branch yet -- I'd just like some initial feedback. Thanks.
(One key question is whether you want to keep some of the unused scripts I removed by moving them over to a new repo.)