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LeeKamentsky / python-javabridge

Python wrapper for the Java Native Interface
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Could not build wheels for javabridge, which is required to install pyproject.toml-based projects #216

Open sara98habte opened 3 months ago

sara98habte commented 3 months ago

Hi I need to install javabridge for MacOS Sonoma but keep getting the below error, any help would be much appreciated:

Collecting javabridge Using cached javabridge-1.0.19.tar.gz (1.3 MB) Installing build dependencies ... done Getting requirements to build wheel ... done Installing backend dependencies ... done Preparing metadata (pyproject.toml) ... done Requirement already satisfied: numpy in ./Py3.9env/lib/python3.9/site-packages (from javabridge) (1.26.4) Building wheels for collected packages: javabridge Building wheel for javabridge (pyproject.toml) ... error error: subprocess-exited-with-error

× Building wheel for javabridge (pyproject.toml) did not run successfully. │ exit code: 1 ╰─> [258 lines of output] running bdist_wheel running build running build_py creating build creating build/lib.macosx-14-arm64-cpython-39 creating build/lib.macosx-14-arm64-cpython-39/javabridge copying javabridge/_version.py -> build/lib.macosx-14-arm64-cpython-39/javabridge copying javabridge/jutil.py -> build/lib.macosx-14-arm64-cpython-39/javabridge copying javabridge/locate.py -> build/lib.macosx-14-arm64-cpython-39/javabridge copying javabridge/init.py -> build/lib.macosx-14-arm64-cpython-39/javabridge copying javabridge/wrappers.py -> build/lib.macosx-14-arm64-cpython-39/javabridge copying javabridge/noseplugin.py -> build/lib.macosx-14-arm64-cpython-39/javabridge creating build/lib.macosx-14-arm64-cpython-39/javabridge/tests copying javabridge/tests/init.py -> build/lib.macosx-14-arm64-cpython-39/javabridge/tests copying javabridge/tests/test_cpython.py -> build/lib.macosx-14-arm64-cpython-39/javabridge/tests copying javabridge/tests/test_javabridge.py -> build/lib.macosx-14-arm64-cpython-39/javabridge/tests copying javabridge/tests/test_jutil.py -> build/lib.macosx-14-arm64-cpython-39/javabridge/tests copying javabridge/tests/test_wrappers.py -> build/lib.macosx-14-arm64-cpython-39/javabridge/tests creating build/lib.macosx-14-arm64-cpython-39/javabridge/jars copying javabridge/jars/rhino-1.7R4.jar -> build/lib.macosx-14-arm64-cpython-39/javabridge/jars copying javabridge/jars/runnablequeue.jar -> build/lib.macosx-14-arm64-cpython-39/javabridge/jars copying javabridge/jars/cpython.jar -> build/lib.macosx-14-arm64-cpython-39/javabridge/jars copying javabridge/jars/test.jar -> build/lib.macosx-14-arm64-cpython-39/javabridge/jars running build_ext javac /private/var/folders/lj/ryd6w92n71v0r70344w19dfr0000gp/T/pip-install-lrxn40q3/javabridge_e6fb09b11e8148c2b7aa4e59eed59020/java/org/cellprofiler/runnablequeue/RunnableQueue.java javac /private/var/folders/lj/ryd6w92n71v0r70344w19dfr0000gp/T/pip-install-lrxn40q3/javabridge_e6fb09b11e8148c2b7aa4e59eed59020/java/org/cellprofiler/javabridge/test/RealRect.java javac /private/var/folders/lj/ryd6w92n71v0r70344w19dfr0000gp/T/pip-install-lrxn40q3/javabridge_e6fb09b11e8148c2b7aa4e59eed59020/java/org/cellprofiler/javabridge/CPython.java /private/var/folders/lj/ryd6w92n71v0r70344w19dfr0000gp/T/pip-install-lrxn40q3/javabridge_e6fb09b11e8148c2b7aa4e59eed59020/java/org/cellprofiler/javabridge/CPythonInvocationHandler.java Note: /private/var/folders/lj/ryd6w92n71v0r70344w19dfr0000gp/T/pip-install-lrxn40q3/javabridge_e6fb09b11e8148c2b7aa4e59eed59020/java/org/cellprofiler/javabridge/CPythonInvocationHandler.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. building 'javabridge._javabridge' extension creating build/temp.macosx-14-arm64-cpython-39 clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk -I/opt/homebrew/opt/openjdk/include -I/opt/homebrew/Cellar/openjdk/21.0.3/libexec/openjdk.jdk/Contents/Home/include -I/opt/homebrew/Cellar/openjdk/21.0.3/libexec/openjdk.jdk/Contents/Home/include/darwin -I/private/var/folders/lj/ryd6w92n71v0r70344w19dfr0000gp/T/pip-build-env-r0ijq55s/normal/lib/python3.9/site-packages/numpy/core/include -I/Users/sh2717/Py3.9env/include -I/opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9 -c _javabridge.c -o build/temp.macosx-14-arm64-cpython-39/_javabridge.o In file included from _javabridge.c:598: In file included from /private/var/folders/lj/ryd6w92n71v0r70344w19dfr0000gp/T/pip-build-env-r0ijq55s/normal/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5: In file included from /private/var/folders/lj/ryd6w92n71v0r70344w19dfr0000gp/T/pip-build-env-r0ijq55s/normal/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /private/var/folders/lj/ryd6w92n71v0r70344w19dfr0000gp/T/pip-build-env-r0ijq55s/normal/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929: /private/var/folders/lj/ryd6w92n71v0r70344w19dfr0000gp/T/pip-build-env-r0ijq55s/normal/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]

warning "Using deprecated NumPy API, disable it with " \

   ^
  _javabridge.c:5159:37: warning: cast to smaller integer type 'int' from 'jobject' (aka 'struct _jobject *') [-Wpointer-to-int-cast]
    __pyx_t_1 = __Pyx_PyInt_From_int(((int)__pyx_v_self->o)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 475, __pyx_L1_error)
                                      ^~~~~~~~~~~~~~~~~~~~
  _javabridge.c:5444:37: warning: cast to smaller integer type 'int' from 'jobject' (aka 'struct _jobject *') [-Wpointer-to-int-cast]
    __pyx_t_1 = __Pyx_PyInt_From_int(((int)__pyx_v_self->o)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 493, __pyx_L1_error)
                                      ^~~~~~~~~~~~~~~~~~~~
  _javabridge.c:5668:37: warning: cast to smaller integer type 'int' from 'jclass' (aka 'struct _jobject *') [-Wpointer-to-int-cast]
    __pyx_t_1 = __Pyx_PyInt_From_int(((int)__pyx_v_self->c)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 502, __pyx_L1_error)
                                      ^~~~~~~~~~~~~~~~~~~~
  _javabridge.c:6022:41: warning: cast to smaller integer type 'int' from 'jmethodID' (aka 'struct _jmethodID *') [-Wpointer-to-int-cast]
    __pyx_t_4 = __Pyx_PyUnicode_From_int(((int)__pyx_v_self->id), 0, ' ', 'x'); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 521, __pyx_L1_error)
                                          ^~~~~~~~~~~~~~~~~~~~~
  _javabridge.c:6301:41: warning: cast to smaller integer type 'int' from 'jfieldID' (aka 'struct _jfieldID *') [-Wpointer-to-int-cast]
    __pyx_t_4 = __Pyx_PyUnicode_From_int(((int)__pyx_v_self->id), 0, ' ', 'x'); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 535, __pyx_L1_error)
                                          ^~~~~~~~~~~~~~~~~~~~~
  _javabridge.c:8122:36: error: call to undeclared function 'CreateJavaVM'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
    __pyx_t_3 = __Pyx_PyInt_From_int(CreateJavaVM((&__pyx_v_self->vm), ((void **)(&__pyx_v_env)), (&__pyx_v_args))); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 651, __pyx_L1_error)
                                     ^
  _javabridge.c:8122:36: note: did you mean 'JNI_CreateJavaVM'?
  /opt/homebrew/opt/openjdk/include/jni.h:1974:1: note: 'JNI_CreateJavaVM' declared here
  JNI_CreateJavaVM(JavaVM **pvm, void **penv, void *args);
  ^
  _javabridge.c:9199:5: error: call to undeclared function 'StopVM'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
      StopVM(__pyx_v_self->vm);
      ^
  _javabridge.c:20700:18: warning: cast to smaller integer type 'int' from 'jobject' (aka 'struct _jobject *') [-Wpointer-to-int-cast]
    __pyx_t_1 = ((((int)__pyx_v_s->o) == 0) != 0);
                   ^~~~~~~~~~~~~~~~~
  _javabridge.c:20828:18: warning: cast to smaller integer type 'int' from 'jobject' (aka 'struct _jobject *') [-Wpointer-to-int-cast]
    __pyx_t_1 = ((((int)__pyx_v_s->o) == 0) != 0);
                   ^~~~~~~~~~~~~~~~~
  _javabridge.c:29747:3: error: incompatible pointer to integer conversion returning 'void *' from a function with result type 'int' [-Wint-conversion]
    import_array();
    ^~~~~~~~~~~~~~
  /private/var/folders/lj/ryd6w92n71v0r70344w19dfr0000gp/T/pip-build-env-r0ijq55s/normal/lib/python3.9/site-packages/numpy/core/include/numpy/__multiarray_api.h:1558:151: note: expanded from macro 'import_array'
  #define import_array() {if (_import_array() < 0) {PyErr_Print(); PyErr_SetString(PyExc_ImportError, "numpy.core.multiarray failed to import"); return NULL; } }
                                                                                                                                                        ^~~~
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/15.0.0/include/stddef.h:89:16: note: expanded from macro 'NULL'
  #  define NULL ((void*)0)
                 ^~~~~~~~~~
  _javabridge.c:30479:22: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                      (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                       ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
        PyUnicode_WSTR_LENGTH(op) :                    \
        ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
  #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                    ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3)
  ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  _javabridge.c:30479:22: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
                      (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                       ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
        ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
               ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
  ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  _javabridge.c:30479:22: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                      (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                       ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
         PyUnicode_WSTR_LENGTH(op)))
         ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
  #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                    ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3)
  ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  _javabridge.c:30479:52: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                      (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                                                     ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
        PyUnicode_WSTR_LENGTH(op) :                    \
        ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
  #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                    ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3)
  ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  _javabridge.c:30479:52: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
                      (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                                                     ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
        ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
               ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
  ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  _javabridge.c:30479:52: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                      (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                                                     ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
         PyUnicode_WSTR_LENGTH(op)))
         ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
  #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                    ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3)
  ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  _javabridge.c:30495:26: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                          (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                           ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
        PyUnicode_WSTR_LENGTH(op) :                    \
        ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
  #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                    ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3)
  ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  _javabridge.c:30495:26: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
                          (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                           ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
        ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
               ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
  ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  _javabridge.c:30495:26: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                          (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                           ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
         PyUnicode_WSTR_LENGTH(op)))
         ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
  #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                    ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3)
  ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  _javabridge.c:30495:59: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                          (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                                                            ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:261:7: note: expanded from macro 'PyUnicode_GET_SIZE'
        PyUnicode_WSTR_LENGTH(op) :                    \
        ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
  #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                    ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3)
  ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  _javabridge.c:30495:59: warning: 'PyUnicode_AsUnicode' is deprecated [-Wdeprecated-declarations]
                          (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                                                            ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:262:14: note: expanded from macro 'PyUnicode_GET_SIZE'
        ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\
               ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:580:1: note: 'PyUnicode_AsUnicode' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
  ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  _javabridge.c:30495:59: warning: '_PyUnicode_get_wstr_length' is deprecated [-Wdeprecated-declarations]
                          (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                                                            ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:264:8: note: expanded from macro 'PyUnicode_GET_SIZE'
         PyUnicode_WSTR_LENGTH(op)))
         ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:451:35: note: expanded from macro 'PyUnicode_WSTR_LENGTH'
  #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op)
                                    ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:445:1: note: '_PyUnicode_get_wstr_length' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3)
  ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  _javabridge.c:32461:16: warning: 'PyUnicode_FromUnicode' is deprecated [-Wdeprecated-declarations]
          return PyUnicode_FromUnicode(NULL, 0);
                 ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h:551:1: note: 'PyUnicode_FromUnicode' has been explicitly marked deprecated here
  Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode(
  ^
  /opt/homebrew/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
  #define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
                                                       ^
  21 warnings and 3 errors generated.
  error: command '/usr/bin/clang' failed with exit code 1
  [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for javabridge Failed to build javabridge ERROR: Could not build wheels for javabridge, which is required to install pyproject.toml-based projects

rafaela-amorim commented 2 months ago

Hello! I was having trouble to install javabridge as well, so I did this fork as a temporary fix and I could finally download and import javabridge. It worked in my google colab!

Edit, missing branch with the fix: https://github.com/rafaela-amorim/python-javabridge/tree/patch-1

pip install --use-pep517 git+https://github.com/rafaela-amorim/python-javabridge@patch-1

jamesgwen commented 3 weeks ago

Also having the same problem on MacOS in python 3.8-10. Does anyone have a Mac fix?