LegumeFederation / cmap-js

Display and compare biological maps (genetic, physical, cytogenetic, genomic, linkage groups, chromosomes, scaffolds).
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support for "wiggle" type data #63

Open adf-ncgr opened 6 years ago

adf-ncgr commented 6 years ago

this will probably require some extension to the data model, although I have in previous work hacked into the existing cmap format a way of encoding such data as an attribute string.

we have some nice numerical genome-wide data for the SNPs on the cowpea maps like various measures of diversity or population differentiation that would be interesting to explore in the context of QTLs associated with regions of selective sweeps (as described in the cowpea genomic resources paper). These types of displays are also quite handy for QTL experimental outputs where you have LOD scores associated with each tested marker, rather than just the intervals above the significance threshold.

putting this issue in for now as a note-to-self reminder, and we can think about it when it might be a good time to prioritize