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LegumeFederation / integrate-medtr-hapmap

Repository for managing tasks related to integrating the Medicago HapMap data into LegFed
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Medicago GWAS study datasets #5

Open agnespychan opened 7 years ago

agnespychan commented 7 years ago

Identify Medicago GWAS datasets and publications available (with Joann Mudge and P. Tiffin)

agnespychan commented 7 years ago

We will collect a small number of example Medicago phenotype datasets for setting up a phenotype database/tool prototype following AraPheno.

The example Medicago phenotype datasets will be collected using the ISA-TAB format. An example of ISATAB format can be found here at AraPheno, https://arapheno.1001genomes.org/rest/study/12/isatab.

agnespychan commented 7 years ago

The current paper under review is Bonhomme et al 2014, High-density genome-wide association mapping implicates an F-box encoding gene in Medicago truncatula resistance to Aphanomyces euteiches (https://www.ncbi.nlm.nih.gov/pubmed/?term=24283472).