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LeiLiLab / EnzyGen

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What kind of data format does the model support? #1

Open Tizzzzy opened 2 months ago

Tizzzzy commented 2 months ago

Hi author, Great work! If I am trying to load the released pretrained model, what kind of data can it support? Does it support protein pdb file? If it doesn't support pdb file, then is it possible to convert the pdb file to the format it support? Thank you

zqfelix422 commented 1 week ago

The same question! Can fine-tune this model by my own enzyme-substrate data?

lileicc commented 1 week ago

Yes. you may further fine-tune the model on your own data. We will add more description about the data format and fine-tuning steps.

JocelynSong commented 1 week ago

Yes, you can finetune your own model based our trained model. We provide a detailed finetuning process, including data preparation and model tuning script in the Readme subsection "Finetune your own model" with a small case of your own data shown at preprocess/case.json