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LeonardSchmiester / Benchmark-Models

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new format for Sneyd_PNAS2002 #6

Closed JanHasenauer closed 5 years ago

dweindl commented 5 years ago

Fails compilation in AMICI. 

model_Sneyd_PNAS2002_dydx.cpp: In function ‘void dydx_model_Sneyd_PNAS2002(double*, amici::realtype, const realtype*, const realtype*, const realtype*, const realtype*, const realtype*, const realtype*)’:
model_Sneyd_PNAS2002_dydx.cpp:16:41: error: ‘_xi_1’ was not declared in this scope
 0.10000000000000001*Subs(Derivative(pow(_xi_1, 4), _xi_1), (_xi_1,), (0.9*IPR_A + 0.1*IPR_O,));
                                         ^~~~~
model_Sneyd_PNAS2002_dydx.cpp:16:26: error: ‘Derivative’ was not declared in this scope
 0.10000000000000001*Subs(Derivative(pow(_xi_1, 4), _xi_1), (_xi_1,), (0.9*IPR_A + 0.1*IPR_O,));
                          ^~~~~~~~~~
model_Sneyd_PNAS2002_dydx.cpp:16:67: error: expected primary-expression before ‘)’ token
 0.10000000000000001*Subs(Derivative(pow(_xi_1, 4), _xi_1), (_xi_1,), (0.9*IPR_A + 0.1*IPR_O,));
                                                                   ^
model_Sneyd_PNAS2002_dydx.cpp:16:93: error: expected primary-expression before ‘)’ token
 0.10000000000000001*Subs(Derivative(pow(_xi_1, 4), _xi_1), (_xi_1,), (0.9*IPR_A + 0.1*IPR_O,));
                                                                                             ^
model_Sneyd_PNAS2002_dydx.cpp:16:21: error: ‘Subs’ was not declared in this scope
 0.10000000000000001*Subs(Derivative(pow(_xi_1, 4), _xi_1), (_xi_1,), (0.9*IPR_A + 0.1*IPR_O,));
                     ^~~~
model_Sneyd_PNAS2002_dydx.cpp:16:21: note: suggested alternative: ‘labs’
 0.10000000000000001*Subs(Derivative(pow(_xi_1, 4), _xi_1), (_xi_1,), (0.9*IPR_A + 0.1*IPR_O,));
                     ^~~~
                     labs
model_Sneyd_PNAS2002_dydx.cpp:19:67: error: expected primary-expression before ‘)’ token
 0.90000000000000002*Subs(Derivative(pow(_xi_1, 4), _xi_1), (_xi_1,), (0.9*IPR_A + 0.1*IPR_O,));
                                                                   ^
model_Sneyd_PNAS2002_dydx.cpp:19:93: error: expected primary-expression before ‘)’ token
 0.90000000000000002*Subs(Derivative(pow(_xi_1, 4), _xi_1), (_xi_1,), (0.9*IPR_A + 0.1*IPR_O,));

Might be an issue in AMICI, but not sure. Maybe related to parametes with time unit? Can somebody look into that?

JanHasenauer commented 5 years ago

I updated the model. maybe you can try again. I also checked that the model is valid SBML.