Cannot see plots after 'Extract timestamps and apply corrections'

[klnikhil]

Hi, I am trying to analyze Neurophometrics data using the instructions in the wiki page. It says that GuPPy displays signal after selecting 'Extract timestamps and apply corrections' but I do not see any plots after this step. I even tried it with the Neurophotometrics data in your 'Sample Data' folder and I do not see the plots pop up. I would appreciate your help in figuring this out.

Here is the output in the command prompt -
Raw data fetched and saved. Extracting signal data and event timestamps... Remove Artifacts : True Combine Data : False Isosbestic Control Channel : True Correcting timestamps by getting rid of the first 5 seconds and convert timestamps to seconds... Timestamps corrected and converted to seconds. Applying correction of timestamps to the data and event timestamps... Timestamps corrections applied to the data and event timestamps. Applying correction of timestamps to the data and event timestamps... Timestamps corrections applied to the data and event timestamps. Applying correction of timestamps to the data and event timestamps... Timestamps corrections applied to the data and event timestamps. Applying correction of timestamps to the data and event timestamps... Timestamps corrections applied to the data and event timestamps. Applying correction of timestamps to the data and event timestamps... Timestamps corrections applied to the data and event timestamps. Applying correction of timestamps to the data and event timestamps... Timestamps corrections applied to the data and event timestamps. Applying correction of timestamps to the data and event timestamps... Timestamps corrections applied to the data and event timestamps. Applying correction of timestamps to the data and event timestamps... Timestamps corrections applied to the data and event timestamps. Removing Artifacts from the data and correcting timestamps... Computing z-score for each of the data... z-score for the data computed. Processing timestamps to get rid of artifacts... Timestamps processed and artifacts are removed. Artifacts from the data are removed and timestamps are corrected. Signal data and event timestamps are extracted. .

[venus-sherathiya]

May I please see the screenshot of storeslist.csv file ? and did you check the outputs of the earlier steps before "Extract timestamps and apply corrections" step ? did the earlier steps throw any errors ?

[klnikhil]

Hi, Here is the screenshot -

The only thing I notice is that it says 'No tsq file found' when reading raw data. Here is he command prompt output for all previous steps -

[venus-sherathiya]

your storesList.csv file does not look right. Please try to use the naming convention mentioned in Storenames GUI while saving storesList file. I think it will solve your problem. Please let me know if it does not work.

[klnikhil]

Changing the names in the Storenames file solved the issue. Thanks a lot! :)