Closed isabella-ca closed 11 months ago
There should be an error in Step 5. When executing Step 5, please look at the terminal output closely. Please send the screenshot of the error in Step 5.
Hello, You're right! I never noticed because the window popped up with my peak labelled (right side). But it threw up an error:
Can I see the screenshot of your control and signal channel csv files ?
Control and signal, in that order!
As I mentioned previously, I tried the suggestion from #41 about making the timestamps be the same, as my system also alternates--so the actual original timestamps are slightly offset between the two.
Timestamps should be in seconds and please use the timestamps which starts from 0.
Addressed it before !!
Hello,
When I run the Step 6 visualization GUI, I get the following error in my command prompt:
FileNotFoundError: File C:\Users\Isabella\use_guppy\use_guppy_output_1\WN_GCaMP_z_score_GCaMP.h5 does not exist
where WN is my event file and the GCaMP is my signal file. I've looked through the other responses about this issue and there didn't seem to be a clear solution-- #41 suggested making my timestamps in the signal and control files the same, so I did so, but that didn't fix my problem.
I'm using a .csv input, and the previous steps all seem to be working fine (graphs pop up and I can change the peak detection etc).
Thank you for your help! -Isabella