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LernerLab / GuPPy

Guided Photometry Analysis in Python, a free and open-source FP analysis tool.
GNU General Public License v3.0
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Vizualization GUI error #45

Closed isabella-ca closed 11 months ago

isabella-ca commented 1 year ago

Hello,

When I run the Step 6 visualization GUI, I get the following error in my command prompt: FileNotFoundError: File C:\Users\Isabella\use_guppy\use_guppy_output_1\WN_GCaMP_z_score_GCaMP.h5 does not exist

where WN is my event file and the GCaMP is my signal file. I've looked through the other responses about this issue and there didn't seem to be a clear solution-- #41 suggested making my timestamps in the signal and control files the same, so I did so, but that didn't fix my problem.

I'm using a .csv input, and the previous steps all seem to be working fine (graphs pop up and I can change the peak detection etc).

Thank you for your help! -Isabella

venus-sherathiya commented 1 year ago

There should be an error in Step 5. When executing Step 5, please look at the terminal output closely. Please send the screenshot of the error in Step 5.

isabella-ca commented 1 year ago

Hello, You're right! I never noticed because the window popped up with my peak labelled (right side). But it threw up an error: image

venus-sherathiya commented 1 year ago

Can I see the screenshot of your control and signal channel csv files ?

isabella-ca commented 1 year ago

Control and signal, in that order! image

As I mentioned previously, I tried the suggestion from #41 about making the timestamps be the same, as my system also alternates--so the actual original timestamps are slightly offset between the two.

venus-sherathiya commented 11 months ago

Timestamps should be in seconds and please use the timestamps which starts from 0.

venus-sherathiya commented 11 months ago

Addressed it before !!