Closed LUTaha closed 6 months ago
May I please see the screenshots of all the storeslist.csv file from the output folder which you are selecting for group analysis ?
Thank you !!
Does this help?
I am so sorry !! I am having a hard time following the storeslist.csv file. I want to look at the storeslist.csv files which gets saved in the data folder when you run individual analysis. So, if you are selecting 4 folders for group analysis. I wanna see all 4 storeslist files which are inside those folders.
Hello, having very similar issue trying to average across files:
Input Parameters File Saved.
Read progress bar increment values function started...
Computing PSTH, Peak and Area for each event...
Average for group : True
Averaging group of data...
Traceback (most recent call last):
File "C:\Users\alank\GuPPy-main\GuPPy\computePsth.py", line 772, in
Attaching my storelist files.
storesList (2).csv storesList (3).csv storesList (4).csv storesList (5).csv storesList (6).csv storesList (7).csv storesList (8).csv storesList (9).csv storesList (10).csv storesList (11).csv storesList (12).csv storesList (13).csv storesList (14).csv storesList (15).csv storesList.csv
I did not have isosbestic control in my experiment.
Best regards, Alan
Let me explain how group analysis works :
Let's say, you have two group : X and Y
The storeslist files for all the data corresponding to group X should have signal_X and control_X
The storeslist files for all the data corresponding to group Y should have signal_Y and control_Y
So, basically X and Y work as identifiers. When I look into your storeslist files, I could not find any common identifiers which can be used for group analysis.
I hope this helps. If not, please let me know
Closing issue because no further questions asked !!
Hi,
I get this error when I try to run group analysis through guppy. Any ideas?
data_csv event_csv Launching server at http://localhost:5056 ['20230623_00602_06557_signal', '20230623_00602_06557_control', '20230623_00602_06557_timestamp'] [['20230623_00602_06557_signal' '20230623_00602_06557_control' '20230623_00602_06557_timestamp'] ['signal_06557' 'control_06557' 'Injection1']] Input Parameters File Saved. Computing PSTH, Peak and Area for each event... Average for group : True Averaging group of data... Traceback (most recent call last): File "computePsth.py", line 682, in
psthForEachStorename(json.loads(sys.argv[1]))
File "computePsth.py", line 636, in psthForEachStorename
averageForGroup(storesListPath, storesList[1,k], inputParameters)
File "computePsth.py", line 489, in averageForGroup
new_path[idx].append(path[i])
IndexError: list index out of range
Finding transients in z-score data and calculating frequency and amplitude....
Combining results for frequency and amplitude of transients in z-score data...
Traceback (most recent call last):
File "findTransientsFreqAndAmp.py", line 326, in
executeFindFreqAndAmp(json.loads(sys.argv[1]))
File "findTransientsFreqAndAmp.py", line 294, in executeFindFreqAndAmp
averageForGroup(storesListPath, inputParameters)
File "findTransientsFreqAndAmp.py", line 245, in averageForGroup
new_path[idx].append(path[i])
IndexError: list index out of range