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LernerLab / GuPPy

Guided Photometry Analysis in Python, a free and open-source FP analysis tool.
GNU General Public License v3.0
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Excel File Output #60

Closed nathanyalross closed 9 months ago

nathanyalross commented 9 months ago

I am trying to visualize this data outside of GuPPy, and I have a timepoint of injection that I did not label with a ttl. I was wondering if there was a way to get the z-score for the data in a csv as an output so that I can use another program to visualize this data, thanks!

venus-sherathiya commented 9 months ago

I didn't get your question completely. What do you wanna visualize and which program do you wanna use for visualization ?

nathanyalross commented 9 months ago

Sorry, guess I'm not exactly sure how to word it. I would like to visualize the data in prism, and to do this I'm imagining that I would need a csv with z-score values for every sample. I injected CNO and I have the time of that injection written down, and I would like to use that information with prism visualization to mark the time of injection relative to the trace. Unless if there is some way that I can mark that timestamp in GuPPy, by manually inputing the timestamp. I apologize if I'm not making sense, I'm still new to this, but thanks for your help!

venus-sherathiya commented 9 months ago

I get what you mean. Can make a csv of your injection timestamps and run the analysis in the GuPPy ? The csv file for the timestamps should look like this Sample_TTL.csv. By doing this way, you will be able to see visualize your data in GuPPy. In the visualization GUI, you have an option to save the plots in PNG or SVG format.

nathanyalross commented 9 months ago

Awesome, I can make a csv of those timestamps. How do I pass this csv into guppy?

venus-sherathiya commented 9 months ago

Put that csv file in the same folder where your fiber photometry raw data is located. Your fiber photometry data is collected using which system (TDT, Doric or NPM) ?

nathanyalross commented 9 months ago

TDT

venus-sherathiya commented 9 months ago

Okay. Put the csv inside the folder where your TDT files are present.

venus-sherathiya commented 9 months ago

Did it work for you ? If yes, can I close this issue ?

nathanyalross commented 9 months ago

Oh yes, this worked! Thank you for the assistance

On Tue, Nov 28, 2023 at 10:32 AM Venus Sherathiya @.***> wrote:

Did it work for you ? If yes, can I close this issue ?

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venus-sherathiya commented 9 months ago

It is resolved !!