Modifications to run PinAPL-py using Docker version 2.9.2

[MariaMiquel]

@PhilippSpahn please check this changes that I have with to make it run using Docker. The version from scripts and Docker is 2.9.2

• Scripts: https://github.com/LewisLabUCSD/PinAPL-Py/tree/v2.9/Scripts
• Docker image: https://github.com/oharismendy/pinaplpy_docker