LiChenPU / NetID

A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
GNU General Public License v3.0
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Cannot install cplexAPI- Still not solved #6

Open Jason245Barnett opened 2 years ago

Jason245Barnett commented 2 years ago

Hi Professor Chen,

Thanks for your amazing work ! I am trying to install cplexAPI, I encountered the similar problem. I already adopted your advice that set the file path to where the file it generated: C:\Users\User>R CMD INSTALL --build --no-multiarch C:\Users\User\Desktop\cplexAPI_1.4.0.tar.gz

I still got the following outcome:


R CMD INSTALL --build --no-multiarch \cplexAPI_1.4.0.tar.gz

installing to library 'C:/Users/PC4/Documents/R/win-library/4.1' installing source package 'cplexAPI' ... package 'cplexAPI' successfully unpacked and MD5 sums checked using staged installation ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/PROGRA~1/R/R-41~1.2/include" -DNDEBUG -g -DR=1 -DUSE_R=1 -I"C:/Program Files/IBM/ILOG/CPLEX_Studio1210/cplex/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cplexAPI.c -o cplexAPI.o In file included from cplexAPI.h:26, from cplexAPI.c:26: cplexR.h:50:10: fatal error: ilcplex/cplex.h: No such file or directory #1/R/R-41~1.2/etc/x64/Makeconf:238: cplexAPI.o] Error 1 ERROR: compilation failed for package 'cplexAPI' removing 'C:/Users/PC4/Documents/R/win-library/4.1/cplexAPI'


I already checked that I added R and R tools to the pathway variable. I am wondering what I can do to solve the problem? Could you please me some advice on it? Thank you so much!!

Best wishes,

Jason

LiChenPU commented 2 years ago

Hi, thanks for your attention to our work.

In addition to set the file path to where the file it generated, you also need to modify the file Makevars.win according to where you install CPLEX_Studio1210 (and not just copy paste the default path).

Let us know if there are further questions.

发件人: @. @.> 代表 Jason245Barnett 发送时间: Thursday, March 17, 2022 8:56 AM 收件人: LiChenPU/NetID @.> 抄送: Subscribed @.> 主题: [LiChenPU/NetID] Cannot install cplexAPI- Still not solved (Issue #6)

Hi Professor Chen,

Thanks for your amazing work ! I am trying to install cplexAPI, I encountered the similar problem. I already adopted your advice that set the file path to where the file it generated: C:\Users\User>R CMD INSTALL --build --no-multiarch C:\Users\User\Desktop\cplexAPI_1.4.0.tar.gz

I still got the following outcome:


R CMD INSTALL --build --no-multiarch \cplexAPI_1.4.0.tar.gz

installing to library 'C:/Users/PC4/Documents/R/win-library/4.1' installing source package 'cplexAPI' ... package 'cplexAPI' successfully unpacked and MD5 sums checked using staged installation ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/PROGRA1/R/R-411.2/include" -DNDEBUG -g -DR=1 -DUSE_R=1 -I"C:/Program Files/IBM/ILOG/CPLEX_Studio1210/cplex/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cplexAPI.c -o cplexAPI.o In file included from cplexAPI.h:26, from cplexAPI.c:26: cplexR.h:50:10: fatal error: ilcplex/cplex.h: No such file or directory #1 https://githubmemory.com/thephpleague/commonmark/issues/1 /R/R-41~1.2/etc/x64/Makeconf:238: cplexAPI.o] Error 1 ERROR: compilation failed for package 'cplexAPI' removing 'C:/Users/PC4/Documents/R/win-library/4.1/cplexAPI'


I already checked that I added R and R tools to the pathway variable. I am wondering what I can do to solve the problem? Could you please me some advice on it? Thank you so much!!

Best wishes,

Jason

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Jason245Barnett commented 2 years ago

image

Yeah I already changed that before. Since i think my version is 201.

image

Is there anything I can do to help?

Great thanks for your help!

Jason245Barnett commented 2 years ago

image

Makevars.win looks like this now but it still does not work.

Jason245Barnett commented 2 years ago

image

Jason245Barnett commented 2 years ago

Sorry, I managed to install it anyway. Thanks!

suprarai commented 4 weeks ago

Sorry, I managed to install it anyway. Thanks!

Hi Jason, Could you please let us know how u manage to install it? Thanks in advance :)