Error while running the example

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Hi Haidong,

I'm executing the given example under the example_data directory using this command python3 DeepTE.py -d working_dir -o output_dir -i example_data/input_test.fasta -m O but it gives a runtime error

Step2: 2) domain information is not exist /home/mohamed.ne/.conda/envs/py36/lib/python3.6/site-packages/keras/utils/conv_utils.py:82: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use arr[tuple(seq)] instead of arr[seq]. In the future this will be interpreted as an array index, arr[np.array(seq)], which will result either in an error or a different result. return np.copy(kernel[slices]) Traceback (most recent call last): File "DeepTE.py", line 274, in main() File "DeepTE.py", line 249, in main pipeline_no_m.classify_pipeline(model_dir, input_CNN_data_file, temp_store_opt_dir, sp_type,te_fam,prop_thr) File "/scratch/mohamed.ne/deepTE/DeepTE/scripts/DeepTE_pipeline_no_modification.py", line 339, in classify_pipeline predict_te(model_file_dic[model_name], model_name, x_all_test_list, y_all_test_nm_list,input_spe_type,y_all_test_nm_list,prop_thr) File "/scratch/mohamed.ne/deepTE/DeepTE/scripts/DeepTE_pipeline_no_modification.py", line 258, in predict_te store_results_dic[str(i)] = str(y_test_nm_list[i]) + '\t' + name_number_dic[model_nm][str(new_predicted_classes_list[i])] KeyError: '1'

would you help! Neveen

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I found out the issue, it just needed a different numpy version (1.16.0) and a different theano : thanks for providing package version info