search

LiLabAtVT / DeepTE

Neural network classification of TE
BSD 3-Clause "New" or "Revised" License
85 stars 7 forks source link

Can not perform DeepTE #5

Closed bilibilij closed 4 years ago

bilibilij commented 4 years ago

DEEPTE I would like to use DeepTE to annotate my genome.
I have followed the Maual.pdf to prepare the Prerequisites of DeepTE software. But when I try to perform DeepTE with command" python DeepTE.py -d /w/00/g/g00/changfu/v2.2/v2.2/fasta/DeepTE_test/working_dir -o /w/00/g/g00/changfu/v2.2/v2.2/fasta/DeepTE_test/output_dir -i /w/00/g/g00/changfu/v2.2/v2.2/fasta/DeepTE_test/repeatmodeler.lib -sp plant -m_dir /w/00/g/g00/changfu/miniconda/envs/py36/share/Plants_model " , the Keyerror '1 ' often print at last . What should I do for performing DeepTE in normal ?

yanhaidong1 commented 4 years ago

Thanks for using the DeepTE. I am thinking you need to use the '-sp P' instead of '-sp plant' in this command line. Best, Haidong

bilibilij commented 4 years ago

Thank you for your reply and now I could run DeepTE with your recommendation.

yanhaidong1 commented 4 years ago

Hi, I glad you can run. If you have any question, please let me know. Thanks!