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LiQian-XC / sctour

A deep learning architecture for robust inference and accurate prediction of cellular dynamics
https://sctour.readthedocs.io
MIT License
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About the possibility of utilizing sctour on other modal data (i.e. scATAC-seq) #3

Closed wu-yc closed 2 years ago

wu-yc commented 2 years ago

Hi Qian,

Since sctour is not based on the splicing hypothesis, is it possible to apply sctour to other modalities such as scATAC-seq or spatial transcriptomics data?

Thanks again for this great algorithm.

Best, Yingcheng

LiQian-XC commented 2 years ago

@wu-yc yes. scTour has been tested in one scATAC-seq dataset (supplementary fig 15 in the manuscript), but has not been tried in spatial data. In principle, it will work in spatial data as well but will test. Thanks!

wu-yc commented 2 years ago

This is really a fantastic package. Good luck with the paper!