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LibraryOfCongress / bagger

The Bagger application packages data files according to the BagIt specification.
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Error happening at start when trying to copy default profile files to user dir #32

Closed telliers closed 8 years ago

telliers commented 8 years ago

In windows 7, when starting bagger, I have an exception related to the task that is supposed to copy the default JSON profiles to my user dir. Here's the exception : 

2016-04-29 11:16:37,945 INFO [main] g.l.r.b.d.JSonBagger [JSonBagger.java:54] Using profiles from C:\Users\stephane.tellier\bagger
java.lang.NullPointerException
        at java.util.Objects.requireNonNull(Objects.java:203)
        at java.nio.file.Files.copy(Files.java:2984)
        at gov.loc.repository.bagger.domain.JSonBagger.copyDefautprofilesToUserFolder(JSonBagger.java:75)
        at gov.loc.repository.bagger.domain.JSonBagger.<init>(JSonBagger.java:57)
        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
        at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:100)
        at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:61)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:877)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:839)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
        at java.security.AccessController.doPrivileged(Native Method)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveManagedMap(BeanDefinitionValueResolver.java:320)
        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:134)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
        at java.security.AccessController.doPrivileged(Native Method)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
        at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:429)
        at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:729)
        at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:381)
        at org.springframework.richclient.application.ApplicationLauncher.loadRootApplicationContext(ApplicationLauncher.java:263)
        at org.springframework.richclient.application.ApplicationLauncher.<init>(ApplicationLauncher.java:159)
        at gov.loc.repository.bagger.BaggerApplication.main(BaggerApplication.java:42)

Therefore, the JSON files aren't copied to my user dir. However, the bagger directory is correctly created.

johnscancella commented 8 years ago

Can you provide the debug log from bagger? It should tell me what file it is trying to copy. Thanks

telliers commented 8 years ago

Here it is.

2016-04-29 11:52:44,146 INFO [main] g.l.r.b.d.JSonBagger [JSonBagger.java:54] Using profiles from C:\Users\stephane.tellier\bagger 2016-04-29 11:52:44,161 DEBUG [main] g.l.r.b.d.JSonBagger [JSonBagger.java:71] Checking if eDeposit-profile.json exists 2016-04-29 11:52:44,161 DEBUG [main] g.l.r.b.d.JSonBagger [JSonBagger.java:74] Profile eDeposit-profile.json does not already exist on the filesystem. Copying it from jar 2016-04-29 11:52:44,192 DEBUG [AWT-EventQueue-0] g.l.r.b.BaggerLifecycleAdvisor [BaggerLifecycleAdvisor.java:35] BaggerLifeCycleAdvisor.onPreStartup 2016-04-29 11:52:44,317 DEBUG [AWT-EventQueue-0] g.l.r.b.BaggerExit [AbstractCommand.java:893] Configuring newly attached button for command 'exitCommand' enabled=true, visible=true 2016-04-29 11:52:44,458 INFO [AWT-EventQueue-0] g.l.r.b.b.i.DefaultBag [DefaultBag.java:103] gov.loc.repository.bagger.bag.impl.DefaultBag: DefaultBag.init file: null, version: 0.96 2016-04-29 11:52:44,458 DEBUG [AWT-EventQueue-0] g.l.r.b.i.AbstractBag [AbstractBag.java:82] Creating new bag. Version is V0_96. 2016-04-29 11:52:44,473 INFO [AWT-EventQueue-0] g.l.r.b.u.BagView [BagView.java:176] createControl - User Home Path: C:\Users\stephane.tellier 2016-04-29 11:52:44,551 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_SOURCE_ORGANIZATION 2016-04-29 11:52:44,551 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_ORGANIZATION_ADDRESS 2016-04-29 11:52:44,551 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_CONTACT_NAME 2016-04-29 11:52:44,551 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_CONTACT_PHONE 2016-04-29 11:52:44,551 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_CONTACT_EMAIL 2016-04-29 11:52:44,551 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_EXTERNAL_DESCRIPTION 2016-04-29 11:52:44,551 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_BAGGING_DATE 2016-04-29 11:52:44,551 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_EXTERNAL_IDENTIFIER 2016-04-29 11:52:44,551 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_BAG_SIZE 2016-04-29 11:52:44,551 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_PAYLOAD_OXUM 2016-04-29 11:52:44,551 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_BAG_GROUP_IDENTIFIER 2016-04-29 11:52:44,551 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_BAG_COUNT 2016-04-29 11:52:44,551 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_INTERNAL_SENDER_IDENTIFIER 2016-04-29 11:52:44,551 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_INTERNAL_SENDER_DESCRIPTION 2016-04-29 11:52:44,707 DEBUG [AWT-EventQueue-0] g.l.r.b.u.BagTreePanel [BagTreePanel.java:20] BagTreePanel.init 2016-04-29 11:52:44,723 DEBUG [AWT-EventQueue-0] g.l.r.b.u.BagTreePanel [BagTreePanel.java:20] BagTreePanel.init 2016-04-29 11:52:44,723 INFO [AWT-EventQueue-0] g.l.r.b.u.TagManifestPane [TagManifestPane.java:82] TagManifestPane.populateBagPane getTags: 2 2016-04-29 11:52:44,723 DEBUG [AWT-EventQueue-0] g.l.r.b.u.TagManifestPane [TagManifestPane.java:92] BagFile: bag-info.txt::{}

2016-04-29 11:52:44,738 DEBUG [AWT-EventQueue-0] g.l.r.b.u.TagManifestPane [TagManifestPane.java:101] manifestName: bag-info.txt 2016-04-29 11:52:44,738 DEBUG [AWT-EventQueue-0] g.l.r.b.u.TagManifestPane [TagManifestPane.java:92] BagFile: bagit.txt::{BagIt-Version=0.96 Tag-File-Character-Encoding=UTF-8}

2016-04-29 11:52:44,738 DEBUG [AWT-EventQueue-0] g.l.r.b.u.TagManifestPane [TagManifestPane.java:101] manifestName: bagit.txt

johnscancella commented 8 years ago

Is that the whole thing? I don't see the stacktrace that you posted from before which should be in there

telliers commented 8 years ago

Yeah I know.

Seems that the error is just appearing in the standard output, don't know why. I didn't changed any settings or configs yet.

Do you know a way to force an error (exception) in Bagger so I can confirm that it appear in the stdout only (or stderr)?

telliers commented 8 years ago

If you check the exception at the beginning of this issue, you can tell that a printstacktrace was done using probably the standard or error output.

johnscancella commented 8 years ago

yeah, I was looking at the latest code where the printstack was replaced with proper logging.

johnscancella commented 8 years ago

Do you happen to be running bagger from somewhere other than your local C drive?

telliers commented 8 years ago

No, I'm running it from my C drive. Here's the full installation path :

C:\VNS-DNF\bagger-2.5.0\bin

I run a DOS prompt into that dir and then execute the bagger.bat. The DOS prompt window is then running in background, where I can see the logs (excluding the DEBUG ones).

johnscancella commented 8 years ago

I updated the logging with more helpful debugging. Could you try version 2.6.0?

telliers commented 8 years ago

Here's the complete debug.log contents. BTW. I'm using Java version 1.8 for running bagger.

2016-04-29 13:01:37,919 INFO [main] g.l.r.b.d.JSonBagger [JSonBagger.java:54] Using profiles from C:\Users\stephane.tellier\bagger
2016-04-29 13:01:37,934 DEBUG [main] g.l.r.b.d.JSonBagger [JSonBagger.java:71] Checking if eDeposit-profile.json exists
2016-04-29 13:01:37,934 DEBUG [main] g.l.r.b.d.JSonBagger [JSonBagger.java:74] Profile eDeposit-profile.json does not already exist on the filesystem. Copying it from jar
2016-04-29 13:01:37,934 ERROR [main] g.l.r.b.d.JSonBagger [JSonBagger.java:79] Failed to copy profile eDeposit-profile.json
java.lang.NullPointerException: null
    at java.util.Objects.requireNonNull(Objects.java:203) ~[na:1.8.0_45]
    at java.nio.file.Files.copy(Files.java:2984) ~[na:1.8.0_45]
    at gov.loc.repository.bagger.domain.JSonBagger.copyDefautprofilesToUserFolder(JSonBagger.java:75) [bagger-business-2.6.0.jar:na]
    at gov.loc.repository.bagger.domain.JSonBagger.<init>(JSonBagger.java:57) [bagger-business-2.6.0.jar:na]
    at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) [na:1.8.0_45]
    at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) [na:1.8.0_45]
    at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) [na:1.8.0_45]
    at java.lang.reflect.Constructor.newInstance(Constructor.java:422) [na:1.8.0_45]
    at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:100) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:61) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:877) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:839) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409) [spring-beans-2.5.5.jar:2.5.5]
    at java.security.AccessController.doPrivileged(Native Method) [na:1.8.0_45]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveManagedMap(BeanDefinitionValueResolver.java:320) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:134) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409) [spring-beans-2.5.5.jar:2.5.5]
    at java.security.AccessController.doPrivileged(Native Method) [na:1.8.0_45]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:429) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:729) [spring-context-2.5.5.jar:2.5.5]
    at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:381) [spring-context-2.5.5.jar:2.5.5]
    at org.springframework.richclient.application.ApplicationLauncher.loadRootApplicationContext(ApplicationLauncher.java:263) [spring-richclient-core-1.1.0.jar:1.1.0]
    at org.springframework.richclient.application.ApplicationLauncher.<init>(ApplicationLauncher.java:159) [spring-richclient-core-1.1.0.jar:1.1.0]
    at gov.loc.repository.bagger.BaggerApplication.main(BaggerApplication.java:42) [bagger-2.6.0.jar:na]
2016-04-29 13:01:38,137 DEBUG [AWT-EventQueue-0] g.l.r.b.BaggerLifecycleAdvisor [BaggerLifecycleAdvisor.java:35] BaggerLifeCycleAdvisor.onPreStartup
2016-04-29 13:01:38,277 DEBUG [AWT-EventQueue-0] g.l.r.b.BaggerExit [AbstractCommand.java:893] Configuring newly attached button for command 'exitCommand' enabled=true, visible=true
2016-04-29 13:01:38,418 INFO [AWT-EventQueue-0] g.l.r.b.b.i.DefaultBag [DefaultBag.java:103] gov.loc.repository.bagger.bag.impl.DefaultBag: DefaultBag.init file: null, version: 0.96
2016-04-29 13:01:38,434 DEBUG [AWT-EventQueue-0] g.l.r.b.i.AbstractBag [AbstractBag.java:82] Creating new bag. Version is V0_96.
2016-04-29 13:01:38,434 INFO [AWT-EventQueue-0] g.l.r.b.u.BagView [BagView.java:176] createControl - User Home Path: C:\Users\stephane.tellier
2016-04-29 13:01:38,496 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_SOURCE_ORGANIZATION
2016-04-29 13:01:38,496 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_ORGANIZATION_ADDRESS
2016-04-29 13:01:38,512 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_CONTACT_NAME
2016-04-29 13:01:38,512 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_CONTACT_PHONE
2016-04-29 13:01:38,512 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_CONTACT_EMAIL
2016-04-29 13:01:38,512 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_EXTERNAL_DESCRIPTION
2016-04-29 13:01:38,512 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_BAGGING_DATE
2016-04-29 13:01:38,512 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_EXTERNAL_IDENTIFIER
2016-04-29 13:01:38,512 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_BAG_SIZE
2016-04-29 13:01:38,512 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_PAYLOAD_OXUM
2016-04-29 13:01:38,512 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_BAG_GROUP_IDENTIFIER
2016-04-29 13:01:38,512 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_BAG_COUNT
2016-04-29 13:01:38,512 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_INTERNAL_SENDER_IDENTIFIER
2016-04-29 13:01:38,512 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_INTERNAL_SENDER_DESCRIPTION
2016-04-29 13:01:38,683 DEBUG [AWT-EventQueue-0] g.l.r.b.u.BagTreePanel [BagTreePanel.java:20] BagTreePanel.init
2016-04-29 13:01:38,683 DEBUG [AWT-EventQueue-0] g.l.r.b.u.BagTreePanel [BagTreePanel.java:20] BagTreePanel.init
2016-04-29 13:01:38,683 INFO [AWT-EventQueue-0] g.l.r.b.u.TagManifestPane [TagManifestPane.java:82] TagManifestPane.populateBagPane getTags: 2
2016-04-29 13:01:38,683 DEBUG [AWT-EventQueue-0] g.l.r.b.u.TagManifestPane [TagManifestPane.java:92] BagFile: bag-info.txt::{}

2016-04-29 13:01:38,699 DEBUG [AWT-EventQueue-0] g.l.r.b.u.TagManifestPane [TagManifestPane.java:101] manifestName: bag-info.txt
2016-04-29 13:01:38,699 DEBUG [AWT-EventQueue-0] g.l.r.b.u.TagManifestPane [TagManifestPane.java:92] BagFile: bagit.txt::{BagIt-Version=0.96
 Tag-File-Character-Encoding=UTF-8}

2016-04-29 13:01:38,714 DEBUG [AWT-EventQueue-0] g.l.r.b.u.TagManifestPane [TagManifestPane.java:101] manifestName: bagit.txt
johnscancella commented 8 years ago

Could you try it again with this new bagger I built? It has even more debug logging: bagger-2.6.dev.zip

telliers commented 8 years ago

Here you go : 

2016-04-29 13:59:22,818 INFO [main] g.l.r.b.d.JSonBagger [JSonBagger.java:54] Using profiles from C:\Users\stephane.tellier\bagger
2016-04-29 13:59:22,819 DEBUG [main] g.l.r.b.d.JSonBagger [JSonBagger.java:71] Getting profile gov/loc/repository/bagger/profiles\eDeposit-profile.json from jar
2016-04-29 13:59:22,819 ERROR [main] g.l.r.b.d.JSonBagger [JSonBagger.java:74] Tried to read gov/loc/repository/bagger/profiles\eDeposit-profile.json from jar file but failed!
2016-04-29 13:59:22,819 DEBUG [main] g.l.r.b.d.JSonBagger [JSonBagger.java:76] Checking if eDeposit-profile.json exists
2016-04-29 13:59:22,819 DEBUG [main] g.l.r.b.d.JSonBagger [JSonBagger.java:79] Profile eDeposit-profile.json does not already exist on the filesystem. Copying it from jar to C:\Users\stephane.tellier\bagger\eDeposit-profile.json
2016-04-29 13:59:22,819 ERROR [main] g.l.r.b.d.JSonBagger [JSonBagger.java:84] Failed to copy profile eDeposit-profile.json
java.lang.NullPointerException: null
    at java.util.Objects.requireNonNull(Objects.java:203) ~[na:1.8.0_45]
    at java.nio.file.Files.copy(Files.java:2984) ~[na:1.8.0_45]
    at gov.loc.repository.bagger.domain.JSonBagger.copyDefautprofilesToUserFolder(JSonBagger.java:80) [bagger-business-2.6.dev.jar:na]
    at gov.loc.repository.bagger.domain.JSonBagger.<init>(JSonBagger.java:57) [bagger-business-2.6.dev.jar:na]
    at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) [na:1.8.0_45]
    at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) [na:1.8.0_45]
    at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) [na:1.8.0_45]
    at java.lang.reflect.Constructor.newInstance(Constructor.java:422) [na:1.8.0_45]
    at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:100) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:61) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:877) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:839) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409) [spring-beans-2.5.5.jar:2.5.5]
    at java.security.AccessController.doPrivileged(Native Method) [na:1.8.0_45]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveManagedMap(BeanDefinitionValueResolver.java:320) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:134) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409) [spring-beans-2.5.5.jar:2.5.5]
    at java.security.AccessController.doPrivileged(Native Method) [na:1.8.0_45]
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:429) [spring-beans-2.5.5.jar:2.5.5]
    at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:729) [spring-context-2.5.5.jar:2.5.5]
    at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:381) [spring-context-2.5.5.jar:2.5.5]
    at org.springframework.richclient.application.ApplicationLauncher.loadRootApplicationContext(ApplicationLauncher.java:263) [spring-richclient-core-1.1.0.jar:1.1.0]
    at org.springframework.richclient.application.ApplicationLauncher.<init>(ApplicationLauncher.java:159) [spring-richclient-core-1.1.0.jar:1.1.0]
    at gov.loc.repository.bagger.BaggerApplication.main(BaggerApplication.java:42) [bagger-2.6.dev.jar:na]
2016-04-29 13:59:23,007 DEBUG [AWT-EventQueue-0] g.l.r.b.BaggerLifecycleAdvisor [BaggerLifecycleAdvisor.java:35] BaggerLifeCycleAdvisor.onPreStartup
2016-04-29 13:59:23,180 DEBUG [AWT-EventQueue-0] g.l.r.b.BaggerExit [AbstractCommand.java:893] Configuring newly attached button for command 'exitCommand' enabled=true, visible=true
2016-04-29 13:59:23,374 INFO [AWT-EventQueue-0] g.l.r.b.b.i.DefaultBag [DefaultBag.java:103] gov.loc.repository.bagger.bag.impl.DefaultBag: DefaultBag.init file: null, version: 0.96
2016-04-29 13:59:23,390 DEBUG [AWT-EventQueue-0] g.l.r.b.i.AbstractBag [AbstractBag.java:82] Creating new bag. Version is V0_96.
2016-04-29 13:59:23,405 INFO [AWT-EventQueue-0] g.l.r.b.u.BagView [BagView.java:176] createControl - User Home Path: C:\Users\stephane.tellier
2016-04-29 13:59:23,468 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_SOURCE_ORGANIZATION
2016-04-29 13:59:23,483 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_ORGANIZATION_ADDRESS
2016-04-29 13:59:23,483 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_CONTACT_NAME
2016-04-29 13:59:23,483 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_CONTACT_PHONE
2016-04-29 13:59:23,483 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_CONTACT_EMAIL
2016-04-29 13:59:23,483 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_EXTERNAL_DESCRIPTION
2016-04-29 13:59:23,483 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_BAGGING_DATE
2016-04-29 13:59:23,483 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_EXTERNAL_IDENTIFIER
2016-04-29 13:59:23,483 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_BAG_SIZE
2016-04-29 13:59:23,483 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_PAYLOAD_OXUM
2016-04-29 13:59:23,483 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_BAG_GROUP_IDENTIFIER
2016-04-29 13:59:23,483 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_BAG_COUNT
2016-04-29 13:59:23,483 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_INTERNAL_SENDER_IDENTIFIER
2016-04-29 13:59:23,483 DEBUG [AWT-EventQueue-0] g.l.r.b.u.AddFieldPanel [AddFieldPanel.java:121] adding standard field: FIELD_INTERNAL_SENDER_DESCRIPTION
2016-04-29 13:59:23,655 DEBUG [AWT-EventQueue-0] g.l.r.b.u.BagTreePanel [BagTreePanel.java:20] BagTreePanel.init
2016-04-29 13:59:23,671 DEBUG [AWT-EventQueue-0] g.l.r.b.u.BagTreePanel [BagTreePanel.java:20] BagTreePanel.init
2016-04-29 13:59:23,671 INFO [AWT-EventQueue-0] g.l.r.b.u.TagManifestPane [TagManifestPane.java:82] TagManifestPane.populateBagPane getTags: 2
2016-04-29 13:59:23,671 DEBUG [AWT-EventQueue-0] g.l.r.b.u.TagManifestPane [TagManifestPane.java:92] BagFile: bag-info.txt::{}

2016-04-29 13:59:23,686 DEBUG [AWT-EventQueue-0] g.l.r.b.u.TagManifestPane [TagManifestPane.java:101] manifestName: bag-info.txt
2016-04-29 13:59:23,686 DEBUG [AWT-EventQueue-0] g.l.r.b.u.TagManifestPane [TagManifestPane.java:92] BagFile: bagit.txt::{BagIt-Version=0.96
 Tag-File-Character-Encoding=UTF-8}

2016-04-29 13:59:23,686 DEBUG [AWT-EventQueue-0] g.l.r.b.u.TagManifestPane [TagManifestPane.java:101] manifestName: bagit.txt
johnscancella commented 8 years ago

I think this may be due to using the wrong file path https://github.com/LibraryOfCongress/bagger/blob/master/bagger-business/src/main/java/gov/loc/repository/bagger/domain/JSonBagger.java#L70 Which would explain why this works in linux, cause it uses a different file path

telliers commented 8 years ago

Yes, that's it. As stipulated in the ClassLoader javadoc : https://docs.oracle.com/javase/8/docs/api/java/lang/ClassLoader.html#getResource-java.lang.String-

The name of a resource is a '/'-separated path name that identifies the resource.

So, if you force the separator to be "/", instead of using File.separator, it will work, even on Windows. I tried it and all is well now, no more errors in logs.